Я уже потратил два дня, чтобы устранить эту ошибку, даже я пробовал обходной путь, который предлагается в нескольких сообщениях stackoverflow «-Djava.util.Arrays.useLegacyMergeSort=true», но он также не работает.
это подробности моей команды и возвращаемой ошибки:
Команда:
hadoop jar CloudBrush.jar -Djava.awt.headless=true -Djava.util.Arrays.useLegacyMergeSort=true -reads /Ec10k -asm Ec10k_Brush -k 21 -readlen 36
Ошибка:
Error: java.lang.IllegalArgumentException: Comparison method violates its general contract!
at java.util.TimSort.mergeHi(TimSort.java:895)
at java.util.TimSort.mergeAt(TimSort.java:512)
at java.util.TimSort.mergeCollapse(TimSort.java:437)
at java.util.TimSort.sort(TimSort.java:241)
at java.util.Arrays.sort(Arrays.java:1512)
at java.util.ArrayList.sort(ArrayList.java:1454)
at java.util.Collections.sort(Collections.java:175)
at Brush.VerifyOverlap$VerifyOverlapReducer.reduce(VerifyOverlap.java:252)
at Brush.VerifyOverlap$VerifyOverlapReducer.reduce(VerifyOverlap.java:1)
at org.apache.hadoop.mapred.ReduceTask.runOldReducer(ReduceTask.java:444)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:392)
at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:163)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:158)
Exception in thread "main" java.io.IOException: Job failed!
at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:836)
at Brush.VerifyOverlap.run(VerifyOverlap.java:381)
at Brush.BrushAssembler.buildOverlap(BrushAssembler.java:326)
at Brush.BrushAssembler.run(BrushAssembler.java:838)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
at Brush.BrushAssembler.main(BrushAssembler.java:913)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Это Comparator
:
class OvelapSizeComparator implements Comparator {
public int compare(Object element1, Object element2) {
OverlapInfo obj1 = (OverlapInfo) element1;
OverlapInfo obj2 = (OverlapInfo) element2;
if ((int)(obj1.overlap_size - obj2.overlap_size) >= 0) {
return -1;
} else {
return 1;
}
}
}